They didn’t. Clone troopers are not the same thing as stormtroopers. Coruscant Guard Clone Troopers shirt Public confidence in the Clones was not exactly high after they carried out a systematic purge of their commanding officers, and the separatist planets didn’t exactly have positive associations either. And so the clones were steadily phased out to be replaced with a new army formed of conscripts and volunteers. These are the Stormtroopers we saw in the original trilogy onwards. The reasons for this are probably mostly political. As established, clone troopers probably weren’t trusted following the war. Building an army of volunteers would be a good way to show that the Empire was interested in moving forward with the systems that had been reintegrated.
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It also would allow the empire to indoctrinate Coruscant Guard Clone Troopers shirt a huge number of their new citizens. Citizen armies eventually retire and go home. When those soldiers have been trained to be unquestionably loyal to the state, they serve to reinforce the same values in their communities. It also helps spur economic recovery, another big plus right after a civil war. These are the foot soldiers of two of the most effective intergalactic empires and while they may look similar they are extraordinarily different in terms of training, military structure and ideology as well as differences in weaponry and armor. But who wins?